3-131468104-T-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_007208.4(MRPL3):āc.881A>Gā(p.Asn294Ser) variant causes a missense change. The variant allele was found at a frequency of 0.0000204 in 1,566,346 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_007208.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
MRPL3 | ENST00000264995.8 | c.881A>G | p.Asn294Ser | missense_variant | Exon 9 of 10 | 1 | NM_007208.4 | ENSP00000264995.2 | ||
MRPL3 | ENST00000425847.6 | c.962A>G | p.Asn321Ser | missense_variant | Exon 10 of 11 | 2 | ENSP00000398536.2 | |||
MRPL3 | ENST00000511168.5 | c.923A>G | p.Asn308Ser | missense_variant | Exon 9 of 10 | 2 | ENSP00000424107.1 | |||
MRPL3 | ENST00000510043.1 | n.305A>G | non_coding_transcript_exon_variant | Exon 3 of 4 | 2 |
Frequencies
GnomAD3 genomes AF: 0.000138 AC: 21AN: 151902Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000185 AC: 4AN: 216518Hom.: 0 AF XY: 0.0000170 AC XY: 2AN XY: 117820
GnomAD4 exome AF: 0.00000495 AC: 7AN: 1414340Hom.: 0 Cov.: 28 AF XY: 0.00000284 AC XY: 2AN XY: 703828
GnomAD4 genome AF: 0.000164 AC: 25AN: 152006Hom.: 0 Cov.: 32 AF XY: 0.000175 AC XY: 13AN XY: 74286
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.881A>G (p.N294S) alteration is located in exon 9 (coding exon 9) of the MRPL3 gene. This alteration results from a A to G substitution at nucleotide position 881, causing the asparagine (N) at amino acid position 294 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at