3-141487078-G-T
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_006506.5(RASA2):c.-6G>T variant causes a 5 prime UTR premature start codon gain change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000606 in 1,337,684 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_006506.5 5_prime_UTR_premature_start_codon_gain
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
RASA2 | ENST00000286364 | c.-6G>T | 5_prime_UTR_premature_start_codon_gain_variant | Exon 1 of 24 | 1 | NM_006506.5 | ENSP00000286364.3 | |||
RASA2 | ENST00000286364 | c.-6G>T | 5_prime_UTR_variant | Exon 1 of 24 | 1 | NM_006506.5 | ENSP00000286364.3 |
Frequencies
GnomAD3 genomes AF: 0.0000600 AC: 9AN: 149918Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000217 AC: 1AN: 46160Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 25542
GnomAD4 exome AF: 0.0000606 AC: 72AN: 1187658Hom.: 0 Cov.: 31 AF XY: 0.0000567 AC XY: 33AN XY: 581564
GnomAD4 genome AF: 0.0000600 AC: 9AN: 150026Hom.: 0 Cov.: 32 AF XY: 0.0000273 AC XY: 2AN XY: 73274
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at