3-161246403-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 3P and 0B. PM2PP3
The NM_015938.5(NMD3):āc.1085G>Cā(p.Arg362Pro) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.000000729 in 1,371,312 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_015938.5 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
NMD3 | NM_015938.5 | c.1085G>C | p.Arg362Pro | missense_variant | 12/16 | ENST00000351193.7 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
NMD3 | ENST00000351193.7 | c.1085G>C | p.Arg362Pro | missense_variant | 12/16 | 1 | NM_015938.5 | P1 | |
NMD3 | ENST00000472947.5 | c.1085G>C | p.Arg362Pro | missense_variant | 12/17 | 1 | |||
NMD3 | ENST00000460469.1 | c.1085G>C | p.Arg362Pro | missense_variant | 11/15 | 1 | P1 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome AF: 7.29e-7 AC: 1AN: 1371312Hom.: 0 Cov.: 24 AF XY: 0.00 AC XY: 0AN XY: 676942
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Mar 01, 2023 | The c.1085G>C (p.R362P) alteration is located in exon 12 (coding exon 11) of the NMD3 gene. This alteration results from a G to C substitution at nucleotide position 1085, causing the arginine (R) at amino acid position 362 to be replaced by a proline (P). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.