3-20175027-T-A
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6BP7BA1
The NM_001199251.3(SGO1):c.504A>T(p.Thr168Thr) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.194 in 1,579,436 control chromosomes in the GnomAD database, including 32,919 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (no stars).
Frequency
Consequence
NM_001199251.3 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.190 AC: 28826AN: 152078Hom.: 3099 Cov.: 32
GnomAD3 exomes AF: 0.223 AC: 51715AN: 232406Hom.: 6711 AF XY: 0.219 AC XY: 27489AN XY: 125682
GnomAD4 exome AF: 0.195 AC: 277761AN: 1427238Hom.: 29809 Cov.: 31 AF XY: 0.196 AC XY: 138131AN XY: 706250
GnomAD4 genome AF: 0.190 AC: 28855AN: 152198Hom.: 3110 Cov.: 32 AF XY: 0.192 AC XY: 14296AN XY: 74424
ClinVar
Submissions by phenotype
SGO1-related disorder Benign:1
This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at