4-99210490-A-G
Variant summary
Our verdict is Likely pathogenic. Variant got 6 ACMG points: 6P and 0B. PM2PP3_Strong
The NM_001102470.2(ADH6):āc.275T>Cā(p.Ile92Thr) variant causes a missense change. The variant allele was found at a frequency of 0.00000248 in 1,610,536 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_001102470.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_pathogenic. Variant got 6 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ADH6 | NM_001102470.2 | c.275T>C | p.Ile92Thr | missense_variant | Exon 4 of 9 | ENST00000394899.6 | NP_001095940.1 | |
ADH6 | NM_000672.4 | c.275T>C | p.Ile92Thr | missense_variant | Exon 4 of 8 | NP_000663.1 | ||
ADH6 | NR_132990.2 | n.227T>C | non_coding_transcript_exon_variant | Exon 3 of 7 | ||||
LOC100507053 | NR_037884.1 | n.3789+6059A>G | intron_variant | Intron 4 of 9 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00000657 AC: 1AN: 152174Hom.: 0 Cov.: 33
GnomAD4 exome AF: 0.00000206 AC: 3AN: 1458362Hom.: 0 Cov.: 31 AF XY: 0.00000138 AC XY: 1AN XY: 725564
GnomAD4 genome AF: 0.00000657 AC: 1AN: 152174Hom.: 0 Cov.: 33 AF XY: 0.00 AC XY: 0AN XY: 74352
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.275T>C (p.I92T) alteration is located in exon 4 (coding exon 4) of the ADH6 gene. This alteration results from a T to C substitution at nucleotide position 275, causing the isoleucine (I) at amino acid position 92 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at