6-131936884-T-C
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000706294.1(LINC01013):n.182+34733T>C variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.206 in 152,180 control chromosomes in the GnomAD database, including 3,787 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000706294.1 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
LINC01013 | ENST00000706294.1 | n.182+34733T>C | intron_variant, non_coding_transcript_variant | ||||||
LINC01013 | ENST00000706326.1 | n.239+34733T>C | intron_variant, non_coding_transcript_variant | ||||||
LINC01013 | ENST00000706327.1 | n.559+32650T>C | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes AF: 0.206 AC: 31370AN: 152062Hom.: 3793 Cov.: 32
GnomAD4 genome AF: 0.206 AC: 31375AN: 152180Hom.: 3787 Cov.: 32 AF XY: 0.213 AC XY: 15861AN XY: 74390
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at