6-44403874-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_001253.4(CDC5L):c.605G>C(p.Arg202Thr) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.000000684 in 1,461,038 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R202K) has been classified as Uncertain significance.
Frequency
Consequence
NM_001253.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CDC5L | NM_001253.4 | c.605G>C | p.Arg202Thr | missense_variant | 6/16 | ENST00000371477.4 | |
CDC5L | XM_047419605.1 | c.170G>C | p.Arg57Thr | missense_variant | 2/12 | ||
POLR1C | NM_001318876.2 | c.946-38016G>C | intron_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CDC5L | ENST00000371477.4 | c.605G>C | p.Arg202Thr | missense_variant | 6/16 | 1 | NM_001253.4 | P1 |
Frequencies
GnomAD3 genomes ? Cov.: 32
GnomAD4 exome AF: 6.84e-7 AC: 1AN: 1461038Hom.: 0 Cov.: 31 AF XY: 0.00000138 AC XY: 1AN XY: 726762
GnomAD4 genome ? Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Nov 03, 2022 | The c.605G>C (p.R202T) alteration is located in exon 6 (coding exon 6) of the CDC5L gene. This alteration results from a G to C substitution at nucleotide position 605, causing the arginine (R) at amino acid position 202 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.