7-102446813-G-A
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001126340.3(ORAI2):c.526G>A(p.Val176Met) variant causes a missense change. The variant allele was found at a frequency of 0.0000347 in 1,613,974 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001126340.3 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ORAI2 | NM_001126340.3 | c.526G>A | p.Val176Met | missense_variant | Exon 4 of 4 | ENST00000495936.7 | NP_001119812.1 | |
ORAI2 | NM_001271818.2 | c.526G>A | p.Val176Met | missense_variant | Exon 4 of 4 | NP_001258747.1 | ||
ORAI2 | NM_032831.4 | c.526G>A | p.Val176Met | missense_variant | Exon 3 of 3 | NP_116220.1 | ||
ORAI2 | NM_001271819.2 | c.295G>A | p.Val99Met | missense_variant | Exon 3 of 3 | NP_001258748.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0000263 AC: 4AN: 152200Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.0000637 AC: 16AN: 251078Hom.: 0 AF XY: 0.0000737 AC XY: 10AN XY: 135766
GnomAD4 exome AF: 0.0000356 AC: 52AN: 1461656Hom.: 0 Cov.: 31 AF XY: 0.0000316 AC XY: 23AN XY: 727152
GnomAD4 genome AF: 0.0000263 AC: 4AN: 152318Hom.: 0 Cov.: 33 AF XY: 0.0000269 AC XY: 2AN XY: 74474
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.526G>A (p.V176M) alteration is located in exon 4 (coding exon 2) of the ORAI2 gene. This alteration results from a G to A substitution at nucleotide position 526, causing the valine (V) at amino acid position 176 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at