7-134933217-G-A
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BP4_StrongBS2
The NM_033138.4(CALD1):c.448G>A(p.Glu150Lys) variant causes a missense change. The variant allele was found at a frequency of 0.0000807 in 1,610,526 control chromosomes in the GnomAD database, including 1 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_033138.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0000331 AC: 5AN: 150970Hom.: 0 Cov.: 30
GnomAD3 exomes AF: 0.000191 AC: 47AN: 246460Hom.: 0 AF XY: 0.000307 AC XY: 41AN XY: 133620
GnomAD4 exome AF: 0.0000856 AC: 125AN: 1459556Hom.: 1 Cov.: 32 AF XY: 0.000140 AC XY: 102AN XY: 726040
GnomAD4 genome AF: 0.0000331 AC: 5AN: 150970Hom.: 0 Cov.: 30 AF XY: 0.0000544 AC XY: 4AN XY: 73588
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.448G>A (p.E150K) alteration is located in exon 5 (coding exon 3) of the CALD1 gene. This alteration results from a G to A substitution at nucleotide position 448, causing the glutamic acid (E) at amino acid position 150 to be replaced by a lysine (K). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at