8-142841204-C-G
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_002066.3(GML):āc.160C>Gā(p.Arg54Gly) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000737 in 1,356,698 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R54C) has been classified as Likely benign.
Frequency
Consequence
NM_002066.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
GML | NM_002066.3 | c.160C>G | p.Arg54Gly | missense_variant | 3/4 | ENST00000220940.2 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
GML | ENST00000220940.2 | c.160C>G | p.Arg54Gly | missense_variant | 3/4 | 1 | NM_002066.3 | P1 | |
GML | ENST00000522728.5 | c.160C>G | p.Arg54Gly | missense_variant | 3/5 | 3 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD4 exome AF: 7.37e-7 AC: 1AN: 1356698Hom.: 0 Cov.: 23 AF XY: 0.00000147 AC XY: 1AN XY: 680764
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at