8-144098945-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 4 ACMG points: 4P and 0B. PM2PP3_Moderate
The NM_030974.4(SHARPIN):āc.1097C>Gā(p.Pro366Arg) variant causes a missense change. The variant allele was found at a frequency of 0.00000565 in 1,592,334 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_030974.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 4 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
SHARPIN | ENST00000398712.7 | c.1097C>G | p.Pro366Arg | missense_variant | Exon 8 of 9 | 1 | NM_030974.4 | ENSP00000381698.2 | ||
SHARPIN | ENST00000359551.6 | n.972C>G | non_coding_transcript_exon_variant | Exon 7 of 8 | 1 | ENSP00000352551.6 | ||||
SHARPIN | ENST00000532536.5 | c.221C>G | p.Pro74Arg | missense_variant | Exon 3 of 3 | 3 | ENSP00000432355.1 |
Frequencies
GnomAD3 genomes AF: 0.0000131 AC: 2AN: 152204Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.0000221 AC: 5AN: 225936Hom.: 0 AF XY: 0.0000162 AC XY: 2AN XY: 123422
GnomAD4 exome AF: 0.00000486 AC: 7AN: 1440130Hom.: 0 Cov.: 31 AF XY: 0.00000279 AC XY: 2AN XY: 716672
GnomAD4 genome AF: 0.0000131 AC: 2AN: 152204Hom.: 0 Cov.: 33 AF XY: 0.0000134 AC XY: 1AN XY: 74356
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.1097C>G (p.P366R) alteration is located in exon 8 (coding exon 8) of the SHARPIN gene. This alteration results from a C to G substitution at nucleotide position 1097, causing the proline (P) at amino acid position 366 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at