8-21976387-A-G
Variant summary
Our verdict is Likely benign. Variant got -6 ACMG points: 0P and 6B. BP4_ModerateBS2
The NM_015024.5(XPO7):āc.629A>Gā(p.Glu210Gly) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.00000479 in 1,461,630 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_015024.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -6 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
XPO7 | NM_015024.5 | c.629A>G | p.Glu210Gly | missense_variant | Exon 7 of 28 | ENST00000252512.14 | NP_055839.3 | |
XPO7 | NM_001100161.2 | c.656A>G | p.Glu219Gly | missense_variant | Exon 7 of 28 | NP_001093631.1 | ||
XPO7 | NM_001362802.2 | c.563A>G | p.Glu188Gly | missense_variant | Exon 6 of 27 | NP_001349731.1 | ||
XPO7 | NR_156173.2 | n.738A>G | non_coding_transcript_exon_variant | Exon 7 of 29 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
XPO7 | ENST00000252512.14 | c.629A>G | p.Glu210Gly | missense_variant | Exon 7 of 28 | 1 | NM_015024.5 | ENSP00000252512.9 | ||
XPO7 | ENST00000518017.1 | n.824A>G | non_coding_transcript_exon_variant | Exon 7 of 7 | 1 | |||||
XPO7 | ENST00000433566.8 | c.632A>G | p.Glu211Gly | missense_variant | Exon 7 of 28 | 5 | ENSP00000410249.3 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD3 exomes AF: 0.00000402 AC: 1AN: 249014Hom.: 0 AF XY: 0.00000740 AC XY: 1AN XY: 135072
GnomAD4 exome AF: 0.00000479 AC: 7AN: 1461630Hom.: 0 Cov.: 29 AF XY: 0.00000550 AC XY: 4AN XY: 727092
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.629A>G (p.E210G) alteration is located in exon 7 (coding exon 7) of the XPO7 gene. This alteration results from a A to G substitution at nucleotide position 629, causing the glutamic acid (E) at amino acid position 210 to be replaced by a glycine (G). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at