8-21980169-T-C
Variant summary
Our verdict is Likely benign. Variant got -4 ACMG points: 0P and 4B. BS2
The NM_015024.5(XPO7):āc.923T>Cā(p.Val308Ala) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.0000069 in 1,450,244 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_015024.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -4 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
XPO7 | NM_015024.5 | c.923T>C | p.Val308Ala | missense_variant | Exon 9 of 28 | ENST00000252512.14 | NP_055839.3 | |
XPO7 | NM_001100161.2 | c.950T>C | p.Val317Ala | missense_variant | Exon 9 of 28 | NP_001093631.1 | ||
XPO7 | NM_001362802.2 | c.857T>C | p.Val286Ala | missense_variant | Exon 8 of 27 | NP_001349731.1 | ||
XPO7 | NR_156173.2 | n.1032T>C | non_coding_transcript_exon_variant | Exon 9 of 29 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 31
GnomAD3 exomes AF: 0.00000869 AC: 2AN: 230278Hom.: 0 AF XY: 0.00000806 AC XY: 1AN XY: 124044
GnomAD4 exome AF: 0.00000690 AC: 10AN: 1450244Hom.: 0 Cov.: 31 AF XY: 0.00000833 AC XY: 6AN XY: 720022
GnomAD4 genome Cov.: 31
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.923T>C (p.V308A) alteration is located in exon 9 (coding exon 9) of the XPO7 gene. This alteration results from a T to C substitution at nucleotide position 923, causing the valine (V) at amino acid position 308 to be replaced by an alanine (A). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at