8-93733575-G-A
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BP4_StrongBS2
The NM_001377960.1(RBM12B):c.2836C>T(p.His946Tyr) variant causes a missense change. The variant allele was found at a frequency of 0.00119 in 1,613,446 control chromosomes in the GnomAD database, including 2 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001377960.1 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
RBM12B | NM_001377960.1 | c.2836C>T | p.His946Tyr | missense_variant | Exon 4 of 4 | ENST00000520560.6 | NP_001364889.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000743 AC: 113AN: 152096Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000682 AC: 170AN: 249244Hom.: 0 AF XY: 0.000628 AC XY: 85AN XY: 135272
GnomAD4 exome AF: 0.00123 AC: 1801AN: 1461232Hom.: 2 Cov.: 32 AF XY: 0.00121 AC XY: 877AN XY: 726868
GnomAD4 genome AF: 0.000742 AC: 113AN: 152214Hom.: 0 Cov.: 32 AF XY: 0.000578 AC XY: 43AN XY: 74420
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.2836C>T (p.H946Y) alteration is located in exon 3 (coding exon 1) of the RBM12B gene. This alteration results from a C to T substitution at nucleotide position 2836, causing the histidine (H) at amino acid position 946 to be replaced by a tyrosine (Y). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at