9-127813236-C-T
Variant summary
Our verdict is Benign. Variant got -10 ACMG points: 0P and 10B. BP4_StrongBP6_ModerateBS2
The NM_004957.6(FPGS):c.1396C>T(p.Arg466Cys) variant causes a missense change. The variant allele was found at a frequency of 0.00993 in 1,607,698 control chromosomes in the GnomAD database, including 117 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★). Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_004957.6 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -10 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00837 AC: 1273AN: 152176Hom.: 13 Cov.: 32
GnomAD3 exomes AF: 0.00952 AC: 2329AN: 244654Hom.: 20 AF XY: 0.00950 AC XY: 1259AN XY: 132512
GnomAD4 exome AF: 0.0101 AC: 14692AN: 1455404Hom.: 104 Cov.: 30 AF XY: 0.00987 AC XY: 7139AN XY: 723478
GnomAD4 genome AF: 0.00836 AC: 1273AN: 152294Hom.: 13 Cov.: 32 AF XY: 0.00936 AC XY: 697AN XY: 74470
ClinVar
Submissions by phenotype
not provided Benign:1
Benign, criteria provided, single submitter | clinical testing | CeGaT Center for Human Genetics Tuebingen | Sep 01, 2024 | FPGS: BP4, BS1, BS2 - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at