9-134417208-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_002957.6(RXRA):c.661G>C(p.Glu221Gln) variant causes a missense change involving the alteration of a conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_002957.6 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
RXRA | NM_002957.6 | c.661G>C | p.Glu221Gln | missense_variant | Exon 5 of 10 | ENST00000481739.2 | NP_002948.1 | |
RXRA | NM_001291920.2 | c.580G>C | p.Glu194Gln | missense_variant | Exon 5 of 10 | NP_001278849.1 | ||
RXRA | NM_001291921.2 | c.370G>C | p.Glu124Gln | missense_variant | Exon 4 of 9 | NP_001278850.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
RXRA | ENST00000481739.2 | c.661G>C | p.Glu221Gln | missense_variant | Exon 5 of 10 | 1 | NM_002957.6 | ENSP00000419692.1 | ||
RXRA | ENST00000672570.1 | c.580G>C | p.Glu194Gln | missense_variant | Exon 5 of 10 | ENSP00000500402.1 | ||||
RXRA | ENST00000356384.4 | n.1071G>C | non_coding_transcript_exon_variant | Exon 7 of 12 | 5 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Cov.: 32
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.661G>C (p.E221Q) alteration is located in exon 5 (coding exon 5) of the RXRA gene. This alteration results from a G to C substitution at nucleotide position 661, causing the glutamic acid (E) at amino acid position 221 to be replaced by a glutamine (Q). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.