9-135119594-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_001282611.2(OLFM1):c.874C>T(p.His292Tyr) variant causes a missense change. The variant allele was found at a frequency of 0.00000991 in 1,614,046 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001282611.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
OLFM1 | NM_001282611.2 | c.874C>T | p.His292Tyr | missense_variant | Exon 6 of 6 | ENST00000371793.8 | NP_001269540.1 | |
OLFM1 | NM_014279.5 | c.820C>T | p.His274Tyr | missense_variant | Exon 6 of 6 | NP_055094.1 | ||
OLFM1 | NM_001282612.1 | c.793C>T | p.His265Tyr | missense_variant | Exon 6 of 6 | NP_001269541.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00000657 AC: 1AN: 152228Hom.: 0 Cov.: 33
GnomAD4 exome AF: 0.0000103 AC: 15AN: 1461818Hom.: 0 Cov.: 32 AF XY: 0.00000963 AC XY: 7AN XY: 727194
GnomAD4 genome AF: 0.00000657 AC: 1AN: 152228Hom.: 0 Cov.: 33 AF XY: 0.00 AC XY: 0AN XY: 74372
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.820C>T (p.H274Y) alteration is located in exon 6 (coding exon 6) of the OLFM1 gene. This alteration results from a C to T substitution at nucleotide position 820, causing the histidine (H) at amino acid position 274 to be replaced by a tyrosine (Y). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at