9-214998-G-A
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_203447.4(DOCK8):c.22G>A(p.Glu8Lys) variant causes a missense change. The variant allele was found at a frequency of 0.00000138 in 1,444,624 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. E8D) has been classified as Uncertain significance.
Frequency
Consequence
NM_203447.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
DOCK8 | NM_203447.4 | c.22G>A | p.Glu8Lys | missense_variant | 1/48 | ENST00000432829.7 | |
DOCK8-AS1 | NR_160804.1 | n.753C>T | non_coding_transcript_exon_variant | 1/1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
DOCK8 | ENST00000432829.7 | c.22G>A | p.Glu8Lys | missense_variant | 1/48 | 1 | NM_203447.4 | ||
DOCK8-AS1 | ENST00000648587.1 | n.744C>T | non_coding_transcript_exon_variant | 1/1 |
Frequencies
GnomAD3 genomes ? Cov.: 34
GnomAD3 exomes AF: 0.00000473 AC: 1AN: 211256Hom.: 0 AF XY: 0.00000845 AC XY: 1AN XY: 118368
GnomAD4 exome AF: 0.00000138 AC: 2AN: 1444624Hom.: 0 Cov.: 109 AF XY: 0.00000278 AC XY: 2AN XY: 718526
GnomAD4 genome ? Cov.: 34
ClinVar
Submissions by phenotype
Autosomal recessive hyper-IgE syndrome Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Invitae | Mar 16, 2023 | In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant  is likely to be tolerated. ClinVar contains an entry for this variant (Variation ID: 1014680). This variant has not been reported in the literature in individuals affected with DOCK8-related conditions. This variant is present in population databases (no rsID available, gnomAD 0.004%). This sequence change replaces glutamic acid, which is acidic and polar, with lysine, which is basic and polar, at codon 8 of the DOCK8 protein (p.Glu8Lys). - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at