ENST00000414504.6:n.1013G>A
Variant summary
Our verdict is Benign. Variant got -13 ACMG points: 0P and 13B. BP4_StrongBP6BS1BS2
The ENST00000414504.6(ATXN8OS):n.1013G>A variant causes a non coding transcript exon change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0173 in 528,636 control chromosomes in the GnomAD database, including 120 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (no stars).
Frequency
Consequence
ENST00000414504.6 non_coding_transcript_exon
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -13 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ATXN8OS | ENST00000414504.6 | n.1013G>A | non_coding_transcript_exon_variant | Exon 5 of 5 | 5 | |||||
ENSG00000288330 | ENST00000673087.1 | n.138C>T | non_coding_transcript_exon_variant | Exon 1 of 1 | ||||||
ATXN8OS | ENST00000660386.1 | n.451-8061G>A | intron_variant | Intron 3 of 3 |
Frequencies
GnomAD3 genomes AF: 0.0172 AC: 2617AN: 151766Hom.: 23 Cov.: 31
GnomAD4 exome AF: 0.0174 AC: 6543AN: 376756Hom.: 97 Cov.: 0 AF XY: 0.0170 AC XY: 3390AN XY: 199124
GnomAD4 genome AF: 0.0172 AC: 2618AN: 151880Hom.: 23 Cov.: 31 AF XY: 0.0168 AC XY: 1245AN XY: 74230
ClinVar
Submissions by phenotype
ATXN8OS-related disorder Benign:1
This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at