ENST00000448430.6:c.1090C>A
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The ENST00000448430.6(DNAAF4):c.1090C>A(p.Pro364Thr) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 12/15 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. P364S) has been classified as Uncertain significance.
Frequency
Consequence
ENST00000448430.6 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
PIERCE2 | NM_001198784.2 | c.19-132G>T | intron_variant | Intron 1 of 1 | ENST00000569691.2 | NP_001185713.1 | ||
DNAAF4 | NM_001033560.2 | c.1090C>A | p.Pro364Thr | missense_variant | Exon 9 of 9 | NP_001028732.1 | ||
DNAAF4-CCPG1 | NR_037923.1 | n.1408+14406C>A | intron_variant | Intron 8 of 15 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Data not reliable, filtered out with message: AC0;AS_VQSR AF: 0.00 AC: 0AN: 1428522Hom.: 0 Cov.: 28 AF XY: 0.00 AC XY: 0AN XY: 710242
GnomAD4 genome Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at