ENST00000706918.1:c.187_213dupGCAGCAGCAGCAGCAGCAGCAGCAGCA
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 4P and 1B. PM1PM2BP3
The ENST00000706918.1(POLGARF):c.187_213dupGCAGCAGCAGCAGCAGCAGCAGCAGCA(p.Ala63_Ala71dup) variant causes a conservative inframe insertion change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000033 in 151,604 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★). Synonymous variant affecting the same amino acid position (i.e. A71A) has been classified as Uncertain significance.
Frequency
Consequence
ENST00000706918.1 conservative_inframe_insertion
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
POLG | NM_002693.3 | c.132_158dupGCAGCAGCAGCAGCAGCAGCAGCAGCA | p.Gln45_Gln53dup | disruptive_inframe_insertion | Exon 2 of 23 | ENST00000268124.11 | NP_002684.1 | |
POLGARF | NM_001430120.1 | c.187_213dupGCAGCAGCAGCAGCAGCAGCAGCAGCA | p.Ala63_Ala71dup | conservative_inframe_insertion | Exon 1 of 2 | NP_001417049.1 | ||
POLG | NM_001126131.2 | c.132_158dupGCAGCAGCAGCAGCAGCAGCAGCAGCA | p.Gln45_Gln53dup | disruptive_inframe_insertion | Exon 2 of 23 | NP_001119603.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
POLGARF | ENST00000706918.1 | c.187_213dupGCAGCAGCAGCAGCAGCAGCAGCAGCA | p.Ala63_Ala71dup | conservative_inframe_insertion | Exon 1 of 2 | ENSP00000516626.1 | ||||
POLG | ENST00000268124.11 | c.132_158dupGCAGCAGCAGCAGCAGCAGCAGCAGCA | p.Gln45_Gln53dup | disruptive_inframe_insertion | Exon 2 of 23 | 1 | NM_002693.3 | ENSP00000268124.5 |
Frequencies
GnomAD3 genomes AF: 0.0000330 AC: 5AN: 151604Hom.: 0 Cov.: 30
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.00000207 AC: 3AN: 1446396Hom.: 0 Cov.: 31 AF XY: 0.00000278 AC XY: 2AN XY: 719198
GnomAD4 genome AF: 0.0000330 AC: 5AN: 151604Hom.: 0 Cov.: 30 AF XY: 0.0000270 AC XY: 2AN XY: 74046
ClinVar
Submissions by phenotype
Progressive sclerosing poliodystrophy Uncertain:1
This variant, c.132_158dup, results in the insertion of 9 amino acid(s) of the POLG protein (p.Gln47_Gln55dup), but otherwise preserves the integrity of the reading frame. This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with POLG-related conditions. Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at