NM_000360.4:c.*277G>A
Variant summary
Our verdict is Benign. Variant got -13 ACMG points: 0P and 13B. BP4_StrongBP6BS1BS2
The NM_000360.4(TH):c.*277G>A variant causes a 3 prime UTR change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00283 in 333,612 control chromosomes in the GnomAD database, including 10 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Conflicting classifications of pathogenicity (no stars).
Frequency
Consequence
NM_000360.4 3_prime_UTR
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -13 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TH | NM_000360.4 | c.*277G>A | 3_prime_UTR_variant | Exon 13 of 13 | ENST00000352909.8 | NP_000351.2 | ||
TH | NM_199292.3 | c.*277G>A | 3_prime_UTR_variant | Exon 14 of 14 | NP_954986.2 | |||
TH | NM_199293.3 | c.*277G>A | 3_prime_UTR_variant | Exon 14 of 14 | NP_954987.2 | |||
TH | XM_011520335.3 | c.*277G>A | 3_prime_UTR_variant | Exon 13 of 13 | XP_011518637.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TH | ENST00000352909 | c.*277G>A | 3_prime_UTR_variant | Exon 13 of 13 | 1 | NM_000360.4 | ENSP00000325951.4 | |||
TH | ENST00000381178 | c.*277G>A | 3_prime_UTR_variant | Exon 14 of 14 | 1 | ENSP00000370571.1 | ||||
TH | ENST00000381175 | c.*277G>A | 3_prime_UTR_variant | Exon 14 of 14 | 1 | ENSP00000370567.1 | ||||
TH | ENST00000333684 | c.*277G>A | 3_prime_UTR_variant | Exon 11 of 11 | 1 | ENSP00000328814.6 |
Frequencies
GnomAD3 genomes AF: 0.00515 AC: 784AN: 152106Hom.: 8 Cov.: 33
GnomAD4 exome AF: 0.000821 AC: 149AN: 181388Hom.: 2 Cov.: 0 AF XY: 0.000757 AC XY: 69AN XY: 91090
GnomAD4 genome AF: 0.00522 AC: 795AN: 152224Hom.: 8 Cov.: 33 AF XY: 0.00496 AC XY: 369AN XY: 74426
ClinVar
Submissions by phenotype
Autosomal recessive DOPA responsive dystonia Uncertain:1
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Neonatal insulin-dependent diabetes mellitus Benign:1
Mutations in INS gene can cause early onset diabetes mellitus which is insulin dependent. May have poor response to sulfonylureas, as this mutation can cause beta cell destruction. However no sufficient evidence is found to ascertain the role of this particular variant rs3842725, yet. -
Transient Neonatal Diabetes, Dominant/Recessive Benign:1
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Maturity onset diabetes mellitus in young Benign:1
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not provided Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at