NM_000869.6:c.383T>C
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_000869.6(HTR3A):c.383T>C(p.Val128Ala) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.0000198 in 1,614,086 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_000869.6 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
HTR3A | NM_000869.6 | c.383T>C | p.Val128Ala | missense_variant | Exon 5 of 9 | ENST00000504030.7 | NP_000860.3 | |
HTR3A | NM_213621.4 | c.383T>C | p.Val128Ala | missense_variant | Exon 5 of 8 | NP_998786.3 | ||
HTR3A | NM_001161772.3 | c.338T>C | p.Val113Ala | missense_variant | Exon 5 of 9 | NP_001155244.1 | ||
HTR3A | NR_046363.2 | n.601T>C | non_coding_transcript_exon_variant | Exon 5 of 8 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000125 AC: 19AN: 152200Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.0000398 AC: 10AN: 251482Hom.: 0 AF XY: 0.0000515 AC XY: 7AN XY: 135914
GnomAD4 exome AF: 0.00000889 AC: 13AN: 1461886Hom.: 0 Cov.: 32 AF XY: 0.0000110 AC XY: 8AN XY: 727246
GnomAD4 genome AF: 0.000125 AC: 19AN: 152200Hom.: 0 Cov.: 33 AF XY: 0.000175 AC XY: 13AN XY: 74368
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.401T>C (p.V134A) alteration is located in exon 5 (coding exon 5) of the HTR3A gene. This alteration results from a T to C substitution at nucleotide position 401, causing the valine (V) at amino acid position 134 to be replaced by an alanine (A). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at