NM_001001995.3:c.641C>T
Variant summary
Our verdict is Likely benign. Variant got -5 ACMG points: 0P and 5B. BP4BS2
The NM_001001995.3(GPM6B):c.641C>T(p.Pro214Leu) variant causes a missense change. The variant allele was found at a frequency of 0.0000284 in 1,197,963 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 12 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001001995.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -5 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0000358 AC: 4AN: 111708Hom.: 0 Cov.: 23 AF XY: 0.00 AC XY: 0AN XY: 33888
GnomAD3 exomes AF: 0.0000110 AC: 2AN: 182587Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 67045
GnomAD4 exome AF: 0.0000276 AC: 30AN: 1086255Hom.: 0 Cov.: 29 AF XY: 0.0000339 AC XY: 12AN XY: 354011
GnomAD4 genome AF: 0.0000358 AC: 4AN: 111708Hom.: 0 Cov.: 23 AF XY: 0.00 AC XY: 0AN XY: 33888
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.641C>T (p.P214L) alteration is located in exon 5 (coding exon 5) of the GPM6B gene. This alteration results from a C to T substitution at nucleotide position 641, causing the proline (P) at amino acid position 214 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at