NM_001113490.2:c.3192A>C
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_001113490.2(AMOT):āc.3192A>Cā(p.Arg1064Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_001113490.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
AMOT | ENST00000371959.9 | c.3192A>C | p.Arg1064Ser | missense_variant | Exon 14 of 14 | 1 | NM_001113490.2 | ENSP00000361027.3 | ||
AMOT | ENST00000371962.5 | c.2496A>C | p.Arg832Ser | missense_variant | Exon 11 of 11 | 1 | ENSP00000361030.1 | |||
AMOT | ENST00000304758.5 | c.1965A>C | p.Arg655Ser | missense_variant | Exon 12 of 12 | 1 | ENSP00000305557.1 |
Frequencies
GnomAD3 genomes Cov.: 23
GnomAD3 exomes AF: 0.0000110 AC: 2AN: 182576Hom.: 0 AF XY: 0.0000149 AC XY: 1AN XY: 67128
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.00000183 AC: 2AN: 1094382Hom.: 0 Cov.: 29 AF XY: 0.00000278 AC XY: 1AN XY: 359990
GnomAD4 genome Cov.: 23
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.3192A>C (p.R1064S) alteration is located in exon 11 (coding exon 11) of the AMOT gene. This alteration results from a A to C substitution at nucleotide position 3192, causing the arginine (R) at amino acid position 1064 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at