NM_001199298.2:c.1344C>A
Variant summary
Our verdict is Benign. Variant got -15 ACMG points: 0P and 15B. BP4_StrongBP6_ModerateBP7BA1
The NM_001199298.2(UIMC1):c.1344C>A(p.Thr448Thr) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.504 in 1,560,034 control chromosomes in the GnomAD database, including 203,288 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★).
Frequency
Consequence
NM_001199298.2 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -15 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
UIMC1 | NM_001199298.2 | c.1344C>A | p.Thr448Thr | synonymous_variant | Exon 9 of 15 | ENST00000511320.6 | NP_001186227.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
UIMC1 | ENST00000511320.6 | c.1344C>A | p.Thr448Thr | synonymous_variant | Exon 9 of 15 | 1 | NM_001199298.2 | ENSP00000421926.1 | ||
UIMC1 | ENST00000506128.5 | c.846C>A | p.Thr282Thr | synonymous_variant | Exon 9 of 15 | 1 | ENSP00000427480.1 |
Frequencies
GnomAD3 genomes AF: 0.577 AC: 87678AN: 151834Hom.: 27018 Cov.: 32
GnomAD3 exomes AF: 0.510 AC: 109445AN: 214716Hom.: 28745 AF XY: 0.506 AC XY: 59141AN XY: 116884
GnomAD4 exome AF: 0.496 AC: 699048AN: 1408082Hom.: 176217 Cov.: 30 AF XY: 0.496 AC XY: 346886AN XY: 699330
GnomAD4 genome AF: 0.578 AC: 87787AN: 151952Hom.: 27071 Cov.: 32 AF XY: 0.574 AC XY: 42618AN XY: 74248
ClinVar
Submissions by phenotype
not specified Benign:1
This alteration is classified as benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at