NM_001379270.1:c.288-26G>C
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_001379270.1(CNGA1):c.288-26G>C variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.809 in 1,326,930 control chromosomes in the GnomAD database, including 435,457 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★). There are indicators that this mutation may affect the branch point..
Frequency
Consequence
NM_001379270.1 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
CNGA1 | NM_001379270.1 | c.288-26G>C | intron_variant | Intron 6 of 10 | ENST00000514170.7 | NP_001366199.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.831 AC: 126001AN: 151670Hom.: 52516 Cov.: 29
GnomAD3 exomes AF: 0.826 AC: 95715AN: 115822Hom.: 39834 AF XY: 0.820 AC XY: 50852AN XY: 62008
GnomAD4 exome AF: 0.806 AC: 947050AN: 1175142Hom.: 382899 Cov.: 17 AF XY: 0.805 AC XY: 472782AN XY: 587542
GnomAD4 genome AF: 0.831 AC: 126102AN: 151788Hom.: 52558 Cov.: 29 AF XY: 0.833 AC XY: 61784AN XY: 74156
ClinVar
Submissions by phenotype
not provided Benign:2
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at