NM_003560.4:c.210-1793A>G
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6_ModerateBA1
The NM_003560.4(PLA2G6):c.210-1793A>G variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.423 in 168,824 control chromosomes in the GnomAD database, including 15,437 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★).
Frequency
Consequence
NM_003560.4 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.421 AC: 63907AN: 151628Hom.: 13771 Cov.: 30
GnomAD4 exome AF: 0.433 AC: 7394AN: 17078Hom.: 1655 Cov.: 0 AF XY: 0.435 AC XY: 3546AN XY: 8158
GnomAD4 genome AF: 0.422 AC: 63971AN: 151746Hom.: 13782 Cov.: 30 AF XY: 0.424 AC XY: 31454AN XY: 74118
ClinVar
Submissions by phenotype
not specified Benign:1
This variant is classified as Benign based on local population frequency. This variant was detected in 63% of patients studied in a panel designed for Epileptic and Developmental Encephalopathy and Progressive Myoclonus Epilepsy. Number of patients: 59. Only high quality variants are reported. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at