NM_003803.4:c.4685+11G>T
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_003803.4(MYOM1):c.4685+11G>T variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.49 in 1,589,660 control chromosomes in the GnomAD database, including 199,735 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_003803.4 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
MYOM1 | ENST00000356443.9 | c.4685+11G>T | intron_variant | Intron 35 of 37 | 1 | NM_003803.4 | ENSP00000348821.4 | |||
MYOM1 | ENST00000261606.11 | c.4397+11G>T | intron_variant | Intron 34 of 36 | 1 | ENSP00000261606.7 | ||||
MYOM1 | ENST00000581075.1 | n.*342G>T | downstream_gene_variant | 5 | ENSP00000462039.1 |
Frequencies
GnomAD3 genomes AF: 0.582 AC: 88404AN: 151972Hom.: 28364 Cov.: 33
GnomAD3 exomes AF: 0.492 AC: 113375AN: 230572Hom.: 29397 AF XY: 0.491 AC XY: 61116AN XY: 124470
GnomAD4 exome AF: 0.480 AC: 689856AN: 1437570Hom.: 171325 Cov.: 34 AF XY: 0.481 AC XY: 343684AN XY: 714240
GnomAD4 genome AF: 0.582 AC: 88505AN: 152090Hom.: 28410 Cov.: 33 AF XY: 0.582 AC XY: 43223AN XY: 74322
ClinVar
Submissions by phenotype
not provided Benign:2
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not specified Benign:1
4685+11G>T in intron 35 of MYOM1: This variant is not expected to have clinical significance because it is not located within the conserved splice consensus seq uence. It has been identified in 46.3% (3809/8224) of European American chromoso mes from a broad population by the NHLBI Exome Sequencing Project (http://evs.gs .washington.edu/EVS; dbSNP rs2298539). -
Hypertrophic cardiomyopathy Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at