NM_005243.4:c.582-9C>G
Variant summary
Our verdict is Benign. Variant got -16 ACMG points: 0P and 16B. BP4_StrongBP6_Very_StrongBS2
The NM_005243.4(EWSR1):c.582-9C>G variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0038 in 1,589,418 control chromosomes in the GnomAD database, including 19 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_005243.4 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -16 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00304 AC: 457AN: 150542Hom.: 1 Cov.: 32
GnomAD3 exomes AF: 0.00283 AC: 684AN: 241320Hom.: 6 AF XY: 0.00285 AC XY: 372AN XY: 130514
GnomAD4 exome AF: 0.00388 AC: 5589AN: 1438764Hom.: 18 Cov.: 32 AF XY: 0.00386 AC XY: 2761AN XY: 715956
GnomAD4 genome AF: 0.00303 AC: 457AN: 150654Hom.: 1 Cov.: 32 AF XY: 0.00282 AC XY: 207AN XY: 73492
ClinVar
Submissions by phenotype
not provided Benign:2
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Ewing sarcoma Benign:1
This variant was classified as: Benign. The following ACMG criteria were applied in classifying this variant: BS1,BS2. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at