NM_006116.3:c.512C>T
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_006116.3(TAB1):c.512C>T(p.Ala171Val) variant causes a missense change. The variant allele was found at a frequency of 0.0000285 in 1,612,502 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_006116.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TAB1 | ENST00000216160.11 | c.512C>T | p.Ala171Val | missense_variant | Exon 5 of 11 | 1 | NM_006116.3 | ENSP00000216160.6 | ||
TAB1 | ENST00000331454.3 | c.512C>T | p.Ala171Val | missense_variant | Exon 5 of 11 | 1 | ENSP00000333049.3 | |||
TAB1 | ENST00000490819.1 | n.235C>T | non_coding_transcript_exon_variant | Exon 2 of 2 | 2 |
Frequencies
GnomAD3 genomes AF: 0.0000197 AC: 3AN: 152160Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000241 AC: 6AN: 249086Hom.: 0 AF XY: 0.0000297 AC XY: 4AN XY: 134744
GnomAD4 exome AF: 0.0000294 AC: 43AN: 1460342Hom.: 0 Cov.: 31 AF XY: 0.0000303 AC XY: 22AN XY: 726426
GnomAD4 genome AF: 0.0000197 AC: 3AN: 152160Hom.: 0 Cov.: 32 AF XY: 0.00 AC XY: 0AN XY: 74344
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.512C>T (p.A171V) alteration is located in exon 5 (coding exon 5) of the TAB1 gene. This alteration results from a C to T substitution at nucleotide position 512, causing the alanine (A) at amino acid position 171 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at