NM_006307.5:c.831C>T
Variant summary
Our verdict is Benign. Variant got -9 ACMG points: 0P and 9B. BP4_StrongBP7BS2
The NM_006307.5(SRPX):c.831C>T(p.Ser277Ser) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000595 in 1,210,423 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 20 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_006307.5 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -9 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
SRPX | ENST00000378533.4 | c.831C>T | p.Ser277Ser | synonymous_variant | Exon 7 of 10 | 1 | NM_006307.5 | ENSP00000367794.3 | ||
ENSG00000250349 | ENST00000465127.1 | c.172-505980G>A | intron_variant | Intron 3 of 8 | 5 | ENSP00000417050.1 |
Frequencies
GnomAD3 genomes AF: 0.0000801 AC: 9AN: 112339Hom.: 0 Cov.: 23 AF XY: 0.0000870 AC XY: 3AN XY: 34487
GnomAD3 exomes AF: 0.0000383 AC: 7AN: 182926Hom.: 0 AF XY: 0.0000593 AC XY: 4AN XY: 67436
GnomAD4 exome AF: 0.0000574 AC: 63AN: 1098031Hom.: 0 Cov.: 31 AF XY: 0.0000468 AC XY: 17AN XY: 363389
GnomAD4 genome AF: 0.0000801 AC: 9AN: 112392Hom.: 0 Cov.: 23 AF XY: 0.0000868 AC XY: 3AN XY: 34550
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at