NM_014000.3:c.875-24T>A
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_014000.3(VCL):c.875-24T>A variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.586 in 1,611,454 control chromosomes in the GnomAD database, including 287,558 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★). There are indicators that this mutation may affect the branch point..
Frequency
Consequence
NM_014000.3 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.660 AC: 100388AN: 152048Hom.: 34997 Cov.: 32
GnomAD3 exomes AF: 0.640 AC: 160777AN: 251162Hom.: 54069 AF XY: 0.636 AC XY: 86294AN XY: 135754
GnomAD4 exome AF: 0.578 AC: 844096AN: 1459288Hom.: 252505 Cov.: 34 AF XY: 0.582 AC XY: 422335AN XY: 726082
GnomAD4 genome AF: 0.660 AC: 100504AN: 152166Hom.: 35053 Cov.: 32 AF XY: 0.668 AC XY: 49680AN XY: 74398
ClinVar
Submissions by phenotype
not specified Benign:4
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not provided Benign:3
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This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease. -
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Dilated cardiomyopathy 1W Benign:1
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Hypertrophic cardiomyopathy 15 Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at