NM_021116.4:c.1307+14G>A
Variant summary
Our verdict is Benign. Variant got -10 ACMG points: 2P and 12B. PM2BP4_StrongBP6_Very_Strong
The NM_021116.4(ADCY1):c.1307+14G>A variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000139 in 1,579,072 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★★).
Frequency
Consequence
NM_021116.4 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -10 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ADCY1 | NM_021116.4 | c.1307+14G>A | intron_variant | Intron 6 of 19 | ENST00000297323.12 | NP_066939.1 | ||
ADCY1 | NM_001281768.2 | c.632+14G>A | intron_variant | Intron 7 of 9 | NP_001268697.1 | |||
ADCY1 | XM_005249584.4 | c.1307+14G>A | intron_variant | Intron 6 of 18 | XP_005249641.1 | |||
ADCY1 | XM_005249585.3 | c.1307+14G>A | intron_variant | Intron 6 of 8 | XP_005249642.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ADCY1 | ENST00000297323.12 | c.1307+14G>A | intron_variant | Intron 6 of 19 | 1 | NM_021116.4 | ENSP00000297323.7 | |||
ADCY1 | ENST00000432715.5 | c.632+14G>A | intron_variant | Intron 7 of 9 | 2 | ENSP00000392721.1 | ||||
ADCY1 | ENST00000621543.1 | c.632+14G>A | intron_variant | Intron 6 of 8 | 5 | ENSP00000479770.1 | ||||
ADCY1 | ENST00000646653.1 | n.248+14G>A | intron_variant | Intron 2 of 7 |
Frequencies
GnomAD3 genomes AF: 0.0000526 AC: 8AN: 152110Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.00000922 AC: 2AN: 217002Hom.: 0 AF XY: 0.00000857 AC XY: 1AN XY: 116702
GnomAD4 exome AF: 0.00000911 AC: 13AN: 1426846Hom.: 0 Cov.: 34 AF XY: 0.00000707 AC XY: 5AN XY: 707288
GnomAD4 genome AF: 0.0000591 AC: 9AN: 152226Hom.: 0 Cov.: 33 AF XY: 0.0000672 AC XY: 5AN XY: 74432
ClinVar
Submissions by phenotype
not specified Benign:1
c.1307+14G>A in intron 6 of ADCY1: This variant is not expected to have clinical significance because it is not located within the splice consensus sequence and it is not predicted to impact splicing. It has been identified in 3/21172 Afric an chromosomes by the Genome Aggregation Database (gnomAD, http://gnomad.broadin stitute.org). ACMG/AMP Criteria applied: BP4, BP7. -
not provided Benign:1
- -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at