NM_021137.5:c.535C>G
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_021137.5(TNFAIP1):c.535C>G(p.Leu179Val) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 12/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_021137.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TNFAIP1 | ENST00000226225.7 | c.535C>G | p.Leu179Val | missense_variant | Exon 6 of 7 | 1 | NM_021137.5 | ENSP00000226225.2 | ||
TNFAIP1 | ENST00000544907.6 | c.223C>G | p.Leu75Val | missense_variant | Exon 5 of 6 | 2 | ENSP00000440749.2 | |||
TNFAIP1 | ENST00000577535.1 | c.223C>G | p.Leu75Val | missense_variant | Exon 4 of 4 | 3 | ENSP00000466301.1 | |||
TNFAIP1 | ENST00000583213.1 | n.256C>G | non_coding_transcript_exon_variant | Exon 4 of 5 | 3 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Cov.: 33
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.535C>G (p.L179V) alteration is located in exon 6 (coding exon 5) of the TNFAIP1 gene. This alteration results from a C to G substitution at nucleotide position 535, causing the leucine (L) at amino acid position 179 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.