NM_052936.5:c.1126+48G>A
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6_ModerateBA1
The NM_052936.5(ATG4A):c.1126+48G>A variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.455 in 906,757 control chromosomes in the GnomAD database, including 71,456 homozygotes. There are 115,420 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★).
Frequency
Consequence
NM_052936.5 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.498 AC: 54933AN: 110365Hom.: 10713 Cov.: 23 AF XY: 0.485 AC XY: 15839AN XY: 32639
GnomAD3 exomes AF: 0.414 AC: 62245AN: 150306Hom.: 10520 AF XY: 0.417 AC XY: 17849AN XY: 42758
GnomAD4 exome AF: 0.449 AC: 357206AN: 796335Hom.: 60735 Cov.: 12 AF XY: 0.468 AC XY: 99536AN XY: 212861
GnomAD4 genome AF: 0.498 AC: 54983AN: 110422Hom.: 10721 Cov.: 23 AF XY: 0.486 AC XY: 15884AN XY: 32708
ClinVar
Submissions by phenotype
not specified Benign:1
This variant is classified as Benign based on local population frequency. This variant was detected in 37% of patients studied by a panel of primary immunodeficiencies. Number of patients: 35. Only high quality variants are reported. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at