NM_144628.4:c.1143G>A
Variant summary
Our verdict is Likely benign. Variant got -4 ACMG points: 2P and 6B. PM2BP4_StrongBP6BP7
The NM_144628.4(TBC1D20):c.1143G>A(p.Ala381Ala) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000602 in 1,614,186 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Conflicting classifications of pathogenicity (no stars).
Frequency
Consequence
NM_144628.4 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -4 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000368 AC: 56AN: 152180Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.000505 AC: 127AN: 251472Hom.: 0 AF XY: 0.000456 AC XY: 62AN XY: 135912
GnomAD4 exome AF: 0.000626 AC: 915AN: 1461888Hom.: 0 Cov.: 31 AF XY: 0.000638 AC XY: 464AN XY: 727244
GnomAD4 genome AF: 0.000368 AC: 56AN: 152298Hom.: 0 Cov.: 33 AF XY: 0.000376 AC XY: 28AN XY: 74462
ClinVar
Submissions by phenotype
not provided Benign:2
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not specified Uncertain:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at