X-13816882-G-T
Variant summary
Our verdict is Likely benign. Variant got -1 ACMG points: 0P and 1B. BP4
The NM_001001995.3(GPM6B):c.23C>A(p.Ala8Glu) variant causes a missense change. The variant allele was found at a frequency of 0.00000898 in 111,308 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 1 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001001995.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -1 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00000898 AC: 1AN: 111308Hom.: 0 Cov.: 22 AF XY: 0.0000298 AC XY: 1AN XY: 33518
GnomAD3 exomes AF: 0.0000397 AC: 7AN: 176374Hom.: 0 AF XY: 0.0000490 AC XY: 3AN XY: 61230
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.0000210 AC: 23AN: 1094556Hom.: 0 Cov.: 30 AF XY: 0.0000472 AC XY: 17AN XY: 360250
GnomAD4 genome AF: 0.00000898 AC: 1AN: 111308Hom.: 0 Cov.: 22 AF XY: 0.0000298 AC XY: 1AN XY: 33518
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.23C>A (p.A8E) alteration is located in exon 1 (coding exon 1) of the GPM6B gene. This alteration results from a C to A substitution at nucleotide position 23, causing the alanine (A) at amino acid position 8 to be replaced by a glutamic acid (E). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at