X-3010047-G-A
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBS1BS2
The NM_001011719.2(ARSH):c.110G>A(p.Arg37His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00235 in 1,208,893 control chromosomes in the GnomAD database, including 49 homozygotes. There are 745 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. 11/19 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_001011719.2 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0122 AC: 1358AN: 111207Hom.: 20 Cov.: 23 AF XY: 0.0110 AC XY: 367AN XY: 33433
GnomAD3 exomes AF: 0.00363 AC: 666AN: 183236Hom.: 13 AF XY: 0.00233 AC XY: 158AN XY: 67688
GnomAD4 exome AF: 0.00135 AC: 1483AN: 1097631Hom.: 29 Cov.: 30 AF XY: 0.00104 AC XY: 378AN XY: 363009
GnomAD4 genome AF: 0.0122 AC: 1359AN: 111262Hom.: 20 Cov.: 23 AF XY: 0.0110 AC XY: 367AN XY: 33498
ClinVar
Submissions by phenotype
not provided Benign:2
- -
- -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at