X-71141301-A-ACAGCAACACCAG
Variant summary
Our verdict is Benign. Variant got -16 ACMG points: 0P and 16B. BP6_Very_StrongBS1BS2
The NM_005120.3(MED12):c.6348_6359dupCCAGCAGCAACA(p.His2116_Gln2119dup) variant causes a disruptive inframe insertion change. The variant allele was found at a frequency of 0.0258 in 1,163,774 control chromosomes in the GnomAD database, including 382 homozygotes. There are 9,478 hemizygotes in GnomAD. Variant has been reported in ClinVar as Likely benign (★★).
Frequency
Consequence
NM_005120.3 disruptive_inframe_insertion
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -16 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0222 AC: 2458AN: 110863Hom.: 26 Cov.: 22 AF XY: 0.0195 AC XY: 647AN XY: 33233
GnomAD3 exomes AF: 0.0232 AC: 2640AN: 113704Hom.: 47 AF XY: 0.0221 AC XY: 897AN XY: 40594
GnomAD4 exome AF: 0.0261 AC: 27509AN: 1052857Hom.: 356 Cov.: 33 AF XY: 0.0257 AC XY: 8829AN XY: 343977
GnomAD4 genome AF: 0.0222 AC: 2459AN: 110917Hom.: 26 Cov.: 22 AF XY: 0.0195 AC XY: 649AN XY: 33297
ClinVar
Submissions by phenotype
not specified Benign:7
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This variant was found in TAADV2-PANCARD,TAAD,TAADV2-1,MACRO-BRAIN -
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not provided Benign:2
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FG syndrome Benign:1
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Cardiovascular phenotype Benign:1
General population or subpopulation frequency is too high to be a pathogenic mutation based on disease/syndrome prevalence and penetrance;Other strong data supporting benign classification -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at