chr1-158354635-A-G
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_030893.4(CD1E):āc.317A>Gā(p.Gln106Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.405 in 1,613,352 control chromosomes in the GnomAD database, including 143,697 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_030893.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.515 AC: 78177AN: 151934Hom.: 23231 Cov.: 32
GnomAD3 exomes AF: 0.445 AC: 110587AN: 248468Hom.: 27037 AF XY: 0.442 AC XY: 59622AN XY: 134854
GnomAD4 exome AF: 0.394 AC: 575075AN: 1461300Hom.: 120420 Cov.: 38 AF XY: 0.397 AC XY: 288784AN XY: 726958
GnomAD4 genome AF: 0.515 AC: 78286AN: 152052Hom.: 23277 Cov.: 32 AF XY: 0.517 AC XY: 38437AN XY: 74304
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at