chr10-114188088-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_001395205.1(TDRD1):c.257C>T(p.Ser86Phe) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 11/19 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001395205.1 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TDRD1 | NM_001395205.1 | c.257C>T | p.Ser86Phe | missense_variant | Exon 2 of 25 | ENST00000695399.1 | NP_001382134.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TDRD1 | ENST00000695399.1 | c.257C>T | p.Ser86Phe | missense_variant | Exon 2 of 25 | NM_001395205.1 | ENSP00000511878.1 | |||
TDRD1 | ENST00000251864.7 | c.257C>T | p.Ser86Phe | missense_variant | Exon 2 of 26 | 1 | ENSP00000251864.2 | |||
TDRD1 | ENST00000369282.5 | c.257C>T | p.Ser86Phe | missense_variant | Exon 2 of 25 | 5 | ENSP00000358288.1 | |||
TDRD1 | ENST00000369280.1 | c.257C>T | p.Ser86Phe | missense_variant | Exon 2 of 24 | 5 | ENSP00000358286.1 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Cov.: 31
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.257C>T (p.S86F) alteration is located in exon 2 (coding exon 1) of the TDRD1 gene. This alteration results from a C to T substitution at nucleotide position 257, causing the serine (S) at amino acid position 86 to be replaced by a phenylalanine (F). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.