chr10-94775367-A-G
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_000769.4(CYP2C19):c.332-23A>G variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.165 in 1,612,890 control chromosomes in the GnomAD database, including 24,492 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as drug response (★★★★). There are indicators that this mutation may affect the branch point..
Frequency
Consequence
NM_000769.4 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
CYP2C19 | ENST00000371321.9 | c.332-23A>G | intron_variant | Intron 2 of 8 | 1 | NM_000769.4 | ENSP00000360372.3 | |||
CYP2C19 | ENST00000480405.2 | c.332-23A>G | intron_variant | Intron 2 of 2 | 1 | ENSP00000483847.1 | ||||
ENSG00000276490 | ENST00000464755.1 | n.*90-23A>G | intron_variant | Intron 7 of 13 | 2 | ENSP00000483243.1 | ||||
CYP2C19 | ENST00000645461.1 | n.1385-23A>G | intron_variant | Intron 1 of 6 |
Frequencies
GnomAD3 genomes AF: 0.173 AC: 26303AN: 151746Hom.: 2543 Cov.: 32
GnomAD3 exomes AF: 0.180 AC: 45341AN: 251244Hom.: 4851 AF XY: 0.187 AC XY: 25439AN XY: 135780
GnomAD4 exome AF: 0.164 AC: 239816AN: 1461026Hom.: 21944 Cov.: 33 AF XY: 0.169 AC XY: 122657AN XY: 726806
GnomAD4 genome AF: 0.173 AC: 26324AN: 151864Hom.: 2548 Cov.: 32 AF XY: 0.177 AC XY: 13157AN XY: 74166
ClinVar
Submissions by phenotype
CYP2C19: no function Other:1
- Allele function
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at