chr11-17610126-C-G
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001292063.2(OTOG):c.4826C>G(p.Pro1609Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. P1609L) has been classified as Likely benign.
Frequency
Consequence
NM_001292063.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
OTOG | NM_001292063.2 | c.4826C>G | p.Pro1609Arg | missense_variant | 36/56 | ENST00000399397.6 | |
OTOG | NM_001277269.2 | c.4862C>G | p.Pro1621Arg | missense_variant | 35/55 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
OTOG | ENST00000399397.6 | c.4826C>G | p.Pro1609Arg | missense_variant | 36/56 | 5 | NM_001292063.2 | P2 | |
OTOG | ENST00000399391.7 | c.4862C>G | p.Pro1621Arg | missense_variant | 35/55 | 5 | A2 | ||
OTOG | ENST00000342528.2 | n.2164C>G | non_coding_transcript_exon_variant | 12/22 | 2 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD3 exomes AF: 0.00000670 AC: 1AN: 149352Hom.: 0 AF XY: 0.0000124 AC XY: 1AN XY: 80410
GnomAD4 exome Cov.: 32
GnomAD4 genome Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at