chr11-47586799-C-G
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001164379.3(FAM180B):c.31C>G(p.Leu11Val) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 14/16 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001164379.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
FAM180B | NM_001164379.3 | c.31C>G | p.Leu11Val | missense_variant | Exon 1 of 3 | ENST00000538490.3 | NP_001157851.1 | |
FAM180B | NM_001367966.1 | c.31C>G | p.Leu11Val | missense_variant | Exon 1 of 2 | NP_001354895.1 | ||
FAM180B | NM_001367967.1 | c.-49C>G | 5_prime_UTR_variant | Exon 1 of 2 | NP_001354896.1 | |||
FAM180B | NM_001367968.1 | c.-191C>G | 5_prime_UTR_variant | Exon 1 of 3 | NP_001354897.1 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Cov.: 31
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.31C>G (p.L11V) alteration is located in exon 1 (coding exon 1) of the FAM180B gene. This alteration results from a C to G substitution at nucleotide position 31, causing the leucine (L) at amino acid position 11 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.