chr11-5249456-G-A
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBP6_Very_Strong
The NM_000559.3(HBG1):c.227C>T(p.Thr76Ile) variant causes a missense change. In-silico tool predicts a benign outcome for this variant. 13/18 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_000559.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00 AC: 38672AN: 67888Hom.: 14771 Cov.: 9 FAILED QC
GnomAD3 exomes AF: 0.357 AC: 44146AN: 123722Hom.: 21892 AF XY: 0.338 AC XY: 22220AN XY: 65650
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.339 AC: 241675AN: 713244Hom.: 115673 Cov.: 14 AF XY: 0.351 AC XY: 126461AN XY: 360300
GnomAD4 genome Data not reliable, filtered out with message: AS_VQSR AF: 0.570 AC: 38747AN: 67956Hom.: 14806 Cov.: 9 AF XY: 0.556 AC XY: 18022AN XY: 32404
ClinVar
Submissions by phenotype
not specified Benign:1
Variant identified in a genome or exome case(s) and assessed due to predicted null impact of the variant or pathogenic assertions in the literature or databases. Disclaimer: This variant has not undergone full assessment. The following are preliminary notes: Frequency -
not provided Benign:1
- -
Hereditary persistence of fetal hemoglobin Benign:1
- -
HBG1 POLYMORPHISM Benign:1
- -
HEMOGLOBIN F (SARDINIA) Other:1
- -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at