chr11-67663750-C-A
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001393402.2(ALDH3B2):c.885G>T(p.Gln295His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000217 in 1,611,812 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 16/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001393402.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ALDH3B2 | NM_001393402.2 | c.885G>T | p.Gln295His | missense_variant | Exon 9 of 10 | ENST00000673966.2 | NP_001380331.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ALDH3B2 | ENST00000673966.2 | c.885G>T | p.Gln295His | missense_variant | Exon 9 of 10 | NM_001393402.2 | ENSP00000501254.1 | |||
ALDH3B2 | ENST00000530069.6 | c.885G>T | p.Gln295His | missense_variant | Exon 9 of 10 | 1 | ENSP00000431595.1 | |||
ALDH3B2 | ENST00000349015.7 | c.885G>T | p.Gln295His | missense_variant | Exon 9 of 10 | 5 | ENSP00000255084.3 | |||
ALDH3B2 | ENST00000531248.1 | c.159-351G>T | intron_variant | Intron 2 of 2 | 5 | ENSP00000435476.1 |
Frequencies
GnomAD3 genomes AF: 0.000112 AC: 17AN: 152204Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000279 AC: 7AN: 250456Hom.: 0 AF XY: 0.0000148 AC XY: 2AN XY: 135342
GnomAD4 exome AF: 0.0000116 AC: 17AN: 1459490Hom.: 0 Cov.: 32 AF XY: 0.0000110 AC XY: 8AN XY: 725616
GnomAD4 genome AF: 0.000118 AC: 18AN: 152322Hom.: 0 Cov.: 32 AF XY: 0.000161 AC XY: 12AN XY: 74484
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.885G>T (p.Q295H) alteration is located in exon 9 (coding exon 7) of the ALDH3B2 gene. This alteration results from a G to T substitution at nucleotide position 885, causing the glutamine (Q) at amino acid position 295 to be replaced by a histidine (H). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at