chr12-102958393-C-CGCAGCAGCA
Variant summary
Our verdict is Benign. Variant got -16 ACMG points: 0P and 16B. BP6_Very_StrongBA1
The NM_004316.4(ASCL1):c.178_186dupCAGCAGCAG(p.Gln60_Gln62dup) variant causes a conservative inframe insertion change involving the alteration of a non-conserved nucleotide. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_004316.4 conservative_inframe_insertion
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -16 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ASCL1 | ENST00000266744.4 | c.178_186dupCAGCAGCAG | p.Gln60_Gln62dup | conservative_inframe_insertion | Exon 1 of 2 | 1 | NM_004316.4 | ENSP00000266744.3 | ||
PAH | ENST00000547319.1 | n.9_17dupTGCTGCTGC | non_coding_transcript_exon_variant | Exon 1 of 3 | 4 | |||||
PAH | ENST00000551337.5 | c.-303_-295dupTGCTGCTGC | upstream_gene_variant | 3 | ENSP00000447620.1 |
Frequencies
GnomAD3 genomes AF: 0.0286 AC: 4297AN: 150084Hom.: 129 Cov.: 0
GnomAD4 exome AF: 0.0166 AC: 22475AN: 1356546Hom.: 65 Cov.: 17 AF XY: 0.0171 AC XY: 11411AN XY: 669058
GnomAD4 genome AF: 0.0286 AC: 4294AN: 150174Hom.: 129 Cov.: 0 AF XY: 0.0296 AC XY: 2172AN XY: 73306
ClinVar
Submissions by phenotype
not specified Benign:4
- -
- -
Gln51[15] in exon 1 of ASCL1: This variant is not expected to have clinical sign ificance because it has been reported in 19% (300/1604) of Japanese chromosomes (Ide 2005) and has been identified in 1.6% (5/304) of Caucasian control chromoso mes tested by our laboratory. -
- -
not provided Benign:1
This variant is associated with the following publications: (PMID: 14566559, 16021468, 20097173) -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at