chr14-22981405-C-T
Variant summary
Our verdict is Likely benign. Variant got -5 ACMG points: 0P and 5B. BP4BS2
The NM_032876.6(AJUBA):c.862G>A(p.Val288Met) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000685 in 1,460,288 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 12/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_032876.6 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -5 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
AJUBA | ENST00000262713.7 | c.862G>A | p.Val288Met | missense_variant | Exon 1 of 8 | 1 | NM_032876.6 | ENSP00000262713.2 | ||
ENSG00000259132 | ENST00000555074.1 | c.49+804G>A | intron_variant | Intron 1 of 4 | 2 | ENSP00000450856.2 | ||||
AJUBA | ENST00000553736.1 | c.181G>A | p.Val61Met | missense_variant | Exon 1 of 2 | 2 | ENSP00000451772.1 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD3 exomes AF: 0.00000819 AC: 2AN: 244142Hom.: 0 AF XY: 0.00000748 AC XY: 1AN XY: 133670
GnomAD4 exome AF: 0.00000685 AC: 10AN: 1460288Hom.: 0 Cov.: 31 AF XY: 0.00000964 AC XY: 7AN XY: 726498
GnomAD4 genome Cov.: 33
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.862G>A (p.V288M) alteration is located in exon 1 (coding exon 1) of the AJUBA gene. This alteration results from a G to A substitution at nucleotide position 862, causing the valine (V) at amino acid position 288 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at