chr16-8796256-G-T
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 3P and 0B. PM2PP3
The NM_015421.4(TMEM186):c.338C>A(p.Ala113Asp) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.000496 in 1,614,054 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_015421.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TMEM186 | ENST00000333050.7 | c.338C>A | p.Ala113Asp | missense_variant | Exon 2 of 2 | 1 | NM_015421.4 | ENSP00000331640.6 | ||
PMM2 | ENST00000566983.5 | c.-15-5543G>T | intron_variant | Intron 1 of 7 | 5 | ENSP00000457956.1 | ||||
TMEM186 | ENST00000564869.1 | n.31+1356C>A | intron_variant | Intron 1 of 2 | 4 |
Frequencies
GnomAD3 genomes AF: 0.000289 AC: 44AN: 152166Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.000243 AC: 61AN: 251398Hom.: 0 AF XY: 0.000294 AC XY: 40AN XY: 135872
GnomAD4 exome AF: 0.000518 AC: 757AN: 1461888Hom.: 0 Cov.: 31 AF XY: 0.000525 AC XY: 382AN XY: 727246
GnomAD4 genome AF: 0.000289 AC: 44AN: 152166Hom.: 0 Cov.: 33 AF XY: 0.000323 AC XY: 24AN XY: 74332
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.338C>A (p.A113D) alteration is located in exon 2 (coding exon 2) of the TMEM186 gene. This alteration results from a C to A substitution at nucleotide position 338, causing the alanine (A) at amino acid position 113 to be replaced by an aspartic acid (D). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at